max planck institut
informatik
informatik
The PSISCORE Registry is a service that keeps track of all available scoring servers. The Registry is manually maintained, if you have a new PSISCORE server that you would like to include into the registry, please contact us. You can find more information about the PSISCORE Registry, such as how to query it programmatically, in our Wiki.
| PSISCORE server | Status | PSISCORE version | Scoring methods | Description | Tags |
|---|---|---|---|---|---|
| http://irefindex.uio.no/psiscore-ws/webservices/psiscore | online | 0.9.7-SNAPSHOT | np-number_pmids | The np score (number pmids) is the total number of unique PMIDs used to support the interaction described in this row. Further information: http://irefindex.uio.no/wiki/README_iRefIndex_MITAB_6.0#Column_number:_15_.28confidence.29 Razick et al., BMC Bioinformatics 2008, 9:405 | Registry tags:
| lpr-lowest_pmid_reuse | The lpr score (lowest pmid re-use) is the lowest number of distinct interactions (RIGIDs: see column 14) that any one PMID (supporting the interaction in this row) is used to support. A value of one indicates that at least one of the PMIDs supporting this interaction has never been used to support any other interaction. This likely indicates that only one interaction was described by that reference and that the present interaction is not derived from high throughput methods. Further information: http://irefindex.uio.no/wiki/README_iRefIndex_MITAB_6.0#Column_number:_15_.28confidence.29 Razick et al., BMC Bioinformatics 2008, 9:405 | Registry tags:
| hpr-highest_pmid_reuse | The hpr score (highest pmid re-use) is the highest number of interactions (RIGIDs: see column 14) that any one PMID (supporting the interaction in this row) is used to support. A high value (e.g. greater than 50) indicates that one PMID describes at least 50 other interactions and it is more likely that high-throughput methods were used. Further information: http://irefindex.uio.no/wiki/README_iRefIndex_MITAB_6.0#Column_number:_15_.28confidence.29 Razick et al., BMC Bioinformatics 2008, 9:405 | Registry tags:
|
| http://mint.bio.uniroma2.it/psiscore-ws-0.9.7-SNAPSHOT/webservices/psiscore | online | 0.9.7-SNAPSHOT | MINT-score | A score between 0 and 1 is assigned to each interaction in MINT. It takes into account all the experimental evidences stored in MINT. Further information: http://mint.bio.uniroma2.it/mint/doc/MINT-confidence-score.html Ceol et al., Nucleic Acids Res. 2010 Jan;38(Database issue):D532-9. | Registry tags:
| HomoMINT-score | A score between 0 and 1 is assigned to each interaction in HomoMINT. It takes into account all the experimental evidences stored in HomoMINT. Further information: http://mint.bio.uniroma2.it/mint/doc/MINT-confidence-score.html Ceol et al., Nucleic Acids Res. 2010 Jan;38(Database issue):D532-9. | Registry tags:
|
| http://www.ebi.ac.uk/enfin-srv/miscore/webservices/psiscore | online | 0.9.7-SNAPSHOT | MIscore - imex curation | A score between 0 and 1 is assigned to each interaction. This score is designed to calculate annotation evidence based on information curated to IMEx or MIMIx standards reporting a molecular interaction experiment. This method will look for annotation evidences coming from all the IMEX interactions reported by IMEX PSICQUIC services. Further information: http://code.google.com/p/enfin-core/wiki/wp1_encore_tools_miscore Orchard et al Nat. Biotech. 2007, 25:894-898 | Registry tags:
| MIscore - psicquic sources | A score between 0 and 1 is assigned to each interaction. This score is designed to calculate annotation evidence based on information curated to IMEx or MIMIx standards reporting a molecular interaction experiment. This method will look for annotation evidences in all the PSICQUIC services reported in the PSICQUIC registry. Further information: http://code.google.com/p/enfin-core/wiki/wp1_encore_tools_miscore Orchard et al Nat. Biotech. 2007, 25:894-898 | Registry tags:
| MIscore - intact | A score between 0 and 1 is assigned to each interaction. This score is designed to calculate annotation evidence based on information curated to IMEx or MIMIx standards reporting a molecular interaction experiment. This method will look for annotation evidences in the IntAct PSICQUIC service. Further information: http://code.google.com/p/enfin-core/wiki/wp1_encore_tools_miscore Orchard et al Nat. Biotech. 2007, 25:894-898 | Registry tags:
| MIscore - intact plus imex curation | A score between 0 and 1 is assigned to each interaction. This score is designed to calculate annotation evidence based on information curated to IMEx or MIMIx standards reporting a molecular interaction experiment. This method will look for annotation evidences coming from all the interaction reported in the IntAct PSICQUIC service and all the IMEX interactions reported by IMEX PSICQUIC services. Further information: http://code.google.com/p/enfin-core/wiki/wp1_encore_tools_miscore Orchard et al Nat. Biotech. 2007, 25:894-898 | Registry tags:
|
| http://psiscore.bioinf.mpi-inf.mpg.de/psiscorews/webservices/psiscore | online | 0.9.7-SNAPSHOT | BPScore | The BPscore is a measure of the functional similarity between two proteins or protein families with respect to their biological process annotation of the Gene Ontology. Further information: http://funsimmat.bioinf.mpi-inf.mpg.de/help3.php Schlicker et al., BMC Bioinformatics (2006), 7(1):302 | Registry tags:
| CCScore | The CCscore is a measure of the functional similarity between two proteins or protein families with respect to their cellular component annotation of the Gene Ontology. Further information: http://funsimmat.bioinf.mpi-inf.mpg.de/help3.php Schlicker et al., BMC Bioinformatics (2006), 7(1):302 | Registry tags:
| MFScore | The MFscore is a measure of the functional similarity between two proteins or protein families with respect to their molecular function annotation of the Gene Ontology. Further information: http://funsimmat.bioinf.mpi-inf.mpg.de/help3.php Schlicker et al., BMC Bioinformatics (2006), 7(1):302 | Registry tags:
| Domain support, inferred | Domain support indidcates protein-protein interactions that can be traced to the underlying protein domain-domain interactions (DDIs). 'Domain support, inferred' contains DDIs from several computational predictions. Further information: | Server tags:
| Domain support, structural | Domain support indidcates protein-protein interactions that can be traced to the underlying protein domain-domain interactions (DDIs). 'Domain support, structural' contains DDIs from datasets that have been inferred from structural information. Further information: | Registry tags:
|